species:   Rhsol
pid:       PID0516
parent:    Rhi-milR-168
paralog:   
locus:     KB317711.1:275026-275119
matures:   ['UUGGCUUGAAUAUCUUGGUGAUGG', 'GUUCCAAGUUCAUUCUUUCU']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317711.1:275026-275119

150 out of bounds
143 alignments
143 proper strand
143 stranded perfect matches

         ************************                         ***************************         
UAGGUGAGUUGACGUUCCAAGUUCAUUCUUUCUAUCCUCAAUAUGAUGUUUGUGAGGCAUUUGGCUUGAAUAUCUUGGUGAUGGAGCCCAUCGC
..((((.(((..(((((((((((((..((......(((((..(......)..))))).....))..))))...))))).)))).))).))))..
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGG---------- l=24 a=8 c
-------------GUUCCAAGUUCAUUCUUUCU------------------------------------------------------------- l=20 a=0 c*
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGGA--------- l=25 a=24 ma
-----------ACGUUCCAAGUUCAUUCUUUCU------------------------------------------------------------- l=22 a=0 ma*

-------------------------------------UCAAUAUGAUGUUUGUGAGGC------------------------------------ l=21 a=2 
--------------------------------------CAAUAUGAUGUUUGUGAGG------------------------------------- l=19 a=2 
--------------------------------------CAAUAUGAUGUUUGUGAGGC------------------------------------ l=20 a=3 
--------------------------------------CAAUAUGAUGUUUGUGAGGCA----------------------------------- l=21 a=4 
--------------------------------------CAAUAUGAUGUUUGUGAGGCAU---------------------------------- l=22 a=2 
--------------------------------------CAAUAUGAUGUUUGUGAGGCAUUUGGC----------------------------- l=27 a=2 
---------------------------------------------AUGUUUGUGAGGCAUUUGGCUUGAAUA---------------------- l=27 a=1 
----------------------------------------------------UGAGGCAUUUGGCUUGAAUA---------------------- l=20 a=1 
------------------------------------------------------AGGCAUUUGGCUUGAAUAUCUUGGU--------------- l=25 a=1 
-------------------------------------------------------GGCAUUUGGCUUGAAUAUCUUGGUGAUG----------- l=28 a=1 
---------------------------------------------------------CAUUUGGCUUGAAUAUCUUGGUGAUGGA--------- l=28 a=4 
----------------------------------------------------------AUUUGGCUUGAAUAUCUUGGU--------------- l=21 a=1 
----------------------------------------------------------AUUUGGCUUGAAUAUCUUGGUGAUG----------- l=25 a=2 
----------------------------------------------------------AUUUGGCUUGAAUAUCUUGGUGAUGG---------- l=26 a=3 
----------------------------------------------------------AUUUGGCUUGAAUAUCUUGGUGAUGGA--------- l=27 a=9 
----------------------------------------------------------AUUUGGCUUGAAUAUCUUGGUGAUGGAG-------- l=28 a=2 
-----------------------------------------------------------UUUGGCUUGAAUAUCUUGGUGAUG----------- l=24 a=3 
-----------------------------------------------------------UUUGGCUUGAAUAUCUUGGUGAUGG---------- l=25 a=5 
-----------------------------------------------------------UUUGGCUUGAAUAUCUUGGUGAUGGA--------- l=26 a=17 
-----------------------------------------------------------UUUGGCUUGAAUAUCUUGGUGAUGGAG-------- l=27 a=4 
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUG----------- l=23 a=2 
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGG---------- l=24 a=8 (c)
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGGA--------- l=25 a=24 (ma)
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGGAG-------- l=26 a=16 
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGGAGC------- l=27 a=2 
-------------------------------------------------------------UGGCUUGAAUAUCUUGGUGAUG----------- l=22 a=1 
-------------------------------------------------------------UGGCUUGAAUAUCUUGGUGAUGG---------- l=23 a=2 
-------------------------------------------------------------UGGCUUGAAUAUCUUGGUGAUGGA--------- l=24 a=14 
-------------------------------------------------------------UGGCUUGAAUAUCUUGGUGAUGGAG-------- l=25 a=5 

mb-01011
ax-1001001
ku-01
ss-101011101110
fn-111
